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Home » Recipes » Muffins

Cottage Cheese Pumpkin Muffins

By Laura Fuentes Updated Oct 6, 2026

5 from 2 votes

Recipe
These cottage cheese pumpkin muffins bake up soft and moist with plenty of pumpkin flavor and warm spice in every bite.

These cottage cheese pumpkin muffins are soft, moist, and full of warm pumpkin spice flavor. The cottage cheese blends right into the batter, giving them an incredibly tender texture plus a little extra protein in every muffin.

overhead view of pumpkin cottage cheese muffins topped with chocolate chips on a baking pan

My Secret Ingredient Pumpkin Muffins

Laura fuentes holding a skillet of food standing in front of a blue door

I too became obsessed with putting cottage cheese into everything from pancakes to muffins, so of course I had to try it in my pumpkin muffins. What surprised me when I tested these was how much I liked what it did to the texture; the cottage cheese blends completely into the batter and makes the muffins especially soft and moist.

My kids already love my banana muffins with cottage cheese, so adding a pumpkin version to the rotation was an easy yes. You can make this recipe with or without the chocolate chips; either way, their 5 grams of protein makes grabbing a second one feel completely reasonable.

close up of taking a bite of a pumpkin cottage cheese muffin with chocolate chips

How Much Protein Per Muffin 

Cottage cheese gives these muffins a protein boost, with 5 grams of protein per muffin.

More Cottage Cheese Breakfast Faves

Another fall favorite in my house is these cottage cheese pumpkin pancakes. So good! My kids also love it when I bake these blueberry cottage cheese muffins and this high-protein banana bread. And cottage cheese waffles? You’ll crave them often!

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Cottage Cheese Pumpkin Muffins

overhead view of pumpkin muffins made with cottage cheese with chocolate chips in a basket
Servings: 12 muffins
Prep Time: 5 minutes mins
Cook Time: 25 minutes mins
Total Time: 30 minutes mins
These cottage cheese pumpkin muffins bake up soft and moist with plenty of pumpkin flavor and warm spice in every bite.
5 from 2 votes
Print Pin

Ingredients

  • 1 cup cottage cheese
  • ½ cup pumpkin puree
  • ⅓ cup (6 tablespoons) melted butter, cooled
  • 2 large eggs
  • 1 teaspoon vanilla extract
  • 1 ¾ cup all-purpose flour
  • ⅓ cup sugar
  • 1 tablespoon baking powder
  • ¼ teaspoon salt
  • 1 teaspoon pumpkin spice*

Instructions

Prep:

  • Preheat the oven to 375F with the top oven rack positioned in the middle of the oven. Prep a 12-muffin pan with paper liners or generously grease it. If using silicone muffin liners, grease them with spray.

Make the batter:

  • In a blender, blend the cottage cheese, pumpkin puree, the cooled melted butter, eggs, and vanilla extract until smooth.
  • In a large bowl, mix the flour, sugar, baking powder, salt, and pumpkin spice.
  • Pour the liquid mixture into the large bowl and use a spatula to mix the batter until there's little to no visible flour left. If you want to add ½ cup chocolate chips, chopped walnuts, or pecans, fold them into the batter now.
  • Fill the prepared muffin tin ¾ of the way with batter, then distribute any remaining batter among the lowest-filled muffin cups.

Bake:

  • Bake in the preheated oven for 22 to 25 minutes, until the tops have browned and a toothpick inserted in the middle comes out clean. Remove them from the oven and let them cool down.

Store:

  • Once cooled, store them in an airtight container at room temperature (on the counter) for 2 days, in the fridge for up to a week, and frozen for up to 3 months. I recommend warming them up in the microwave for 15 seconds before enjoying them.

Notes

  • Swap the pumpkin spice for 1 ½ teaspoons of cinnamon. 
  • Add ½ to ¾ cup of chocolate chips.

The recommendations below may include affiliate links.

Equipment

¼ cup muffin batter scoop
Muffin Scoop
small jar of aluminum free baking powder
Aluminum-free baking powder
Muffin Pan
Clean Treats
Clean Treats Cookbook

Nutrition

Serving: 1 muffin | Calories: 163kcal | Carbohydrates: 21g | Protein: 5g | Fat: 6g | Saturated Fat: 4g | Polyunsaturated Fat: 0.4g | Monounsaturated Fat: 2g | Trans Fat: 0.2g | Cholesterol: 42mg | Sodium: 283mg | Potassium: 70mg | Fiber: 1g | Sugar: 7g | Vitamin A: 1794IU | Vitamin C: 0.5mg | Calcium: 83mg | Iron: 1mg

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    Blender Banana Oat Muffins

Comments

    5 from 2 votes

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    Recipe Rating




  1. Linda says

    November 14, 2025 at 8:59 am

    5 stars
    These protein pumpkin muffins with cottage cheese were great! They were fluffy, moist and had great flavor!

    Reply
  2. Ivy says

    October 20, 2025 at 11:33 am

    5 stars
    I love pumpkin muffins! Such a great idea to add cottage cheese to the recipe!

    Reply
Laura fuentes holding a skillet of food standing in front of a blue door

Hi! I'm Laura.
Known for the internet’s favorite pancake recipes and real-life dinners that make weeknights easier. These are the meals my family loves, and yours will too!

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